To make it easy for non-profits to stay compliant, we’ve compiled a list of Annual Requirements and Annual Best Practices for non-profit organizations.
FEDERAL REQUIREMENTS (FORM 990) TO MAINTAIN 501(c)3 STATUS
Must file an annual information return with the IRS even if revenue is $0. No fee to the IRS to file a Form 990.
Types of Form 990 and Their Requirements
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Form 990-N: revenue < or = $50,000 in the fiscal year
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File an Electronic Notice (e-postcard)
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Form 990 – EZ: revenue between $50,000 – $200,000 and total assets < $500,000
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Form 990: revenue > $200,000 or total assets > $500,000
NOTE: Form 990 is required to be available to the public upon request; organizations are not required to post
them to their website. However, it will be available at guidestar.org.
DUE DATE
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5 months after fiscal year end, on the 15th day (i.e. if fiscal year end is 12/31, the filing is due 5/15)
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Option to request 6-month extension (i.e. 12/31 return would then be due 11/15)
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Failure to file for consecutive 3 years will result in the loss of the organization’s taxexempt status
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Secretary of State – https://mblsportal.sos.state.mn.us/Business/Search
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MUST renew annual registration by 12/31 (regardless of fiscal year)
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No fee to renew; can be completed online (create account on Secretary of State website)
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Failure to renew may result in consequences for the organization
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Attorney General – https://www.ag.state.mn.us/charity/
- If any of the following exist for the organization, it MUST register with the AG’s office AND file an annual report:
- pays staff, independent contractors, or professional fundraisers or
- holds > $25,000 in assets or
- has > $25,000 in revenue
- If any of the following exist for the organization, it MUST register with the AG’s office AND file an annual report:
DUE DATE
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7 months after fiscal year end, on the 15th day (i.e. if fiscal year end is 12/31, the filing is due 7/15)
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Option to request 4-month extension (i.e. 12/31 return would then be due 11/15)
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Failure to file for consecutive 3 years will result in the loss of the organization’s tax exempt status
AUDIT REQUIREMENTS
More than $750,000 in revenue
- MUST file audited financial statements prepared in accordance with GAAP
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May NOT treat Form 990 as audited financial statement
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Less than $750,000 in revenue AND files Form 990
- Not required to submit audited financial statements
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May use Form 990 as financial statement if numbers were prepared in accordance with GAAP.
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Less than $750,000 in revenue AND does not file Form 990
- Not required to submit audited financial statements
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If 990-EZ, 990-N, or 990-PF, must complete financial section of annual report and may not treat tax return as its financial statement.
Filing fee: $25 (plus late fees, if applicable); can file electronically or by mail
Form W-2 – Required for every employee you paid during the calendar year
- IRS Link to General Instructions for form – https://www.irs.gov/pub/irs-pdf/iw2w3.pdf
- Social Security Administration threshold for e-filing W2’s is 10 or more
- If 10 or more combined forms W2, 1099, 1095, etc. they must all be e-filed
- Be sure all box 12 codes are correct and being reported.
- MN e-filing is also required for 10 or more forms W2/1099 combined.
- Due Date: generally last day in January following end of calendar year
ACA (Affordable Care Act) Reporting
- Fully insured (third-party insurance provider) – Employers with 50 or more full-time and full-time equivalent employees are considered applicable large employers (ALEs) and therefore MUST furnish Form 1094-C and 1095-C to eligible employees
- Self-Insured and Level-Funded – All ALEs and small employers (regardless of employee count) must furnish forms to all active/non-active employees and dependents (Form 1094-C and Form 1095-C for ALEs; Form 1094-B and 1095-B for small employers)
Workers’ Compensation Insurance
- Minnesota requires insurance for employees, volunteers, Board members, and 1099 contractors – no minimum number of employees
- Nonprofit associations which do not pay more than $1,000 in wages in a year are NOT required to have workers’ compensation insurance
Independent Contractors – 1099 Reporting
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Compensation paid to individuals, partnerships, LLCs (but not corporations), who are not considered employees, aggregating $600 or more, in the calendar year
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Payment for reimbursable items (i.e. mileage) is EXCLUDED from consideration
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Payment of $600 or more to attorneys are reportable, whether or not the business is incorporated
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Rents, annuities, and other payments (i.e. prizes) aggregating more than $600 or more are reportable
DUE DATE: Typically last day in January following calendar year-end
- Recipient of the Form 1099 must receive the form post-marked no later than due date
- Transmittal of Form 1096 due to the IRS no later than the due date
- If filing more than 10 Form 1099s, then MUST file electronically with IRS
- Failure to file or filing late may result in a penalty of up to $660 per Form 1099
Sales and Use Tax Filings https://www.revenue.state.mn.us/book/export/html/10021
- A nonprofit may be subject to Sales and Use Tax if the business does any of the following, not limited to (see MN Sales and Use Tax Business Guide for full list):
- Facilitates the sale of taxable goods or services to customers in Minnesota on behalf of a business
- Sells products to customers in Minnesota, using the internet, mail order, or telephone, without having a physical presence in the state
- MUST register for a MN Tax ID Number and Sales and Use Tax account (through MN e-services)
- May be required to pay State and Local tax
- Filing frequency is based on monthly sales and use – may be required to file monthly, quarterly, or annually; due on the 20th of the following month, quarter, or on Feb 5th annually
- Nonprofits may apply for sales tax exemption from State of MN to make purchases tax exempt; this is NOT an automatic or guaranteed exemption – you MUST apply
Contributions – Donor Acknowledgement Letters
- IRS requires nonprofits to send written acknowledge letters to donors who give more than $250 in a calendar year; can be via mail or email; can be in the form of a receipt
- Minimum of three active Board members during the calendar year
Documentation of at least one meeting held during the calendar year
Grant Reporting and Compliance Requirements
- Performance Review Process
- Financial Reconciliation of Account Balances and Systems
- Financial Review and Budgeting Process
- Board Member Transition and Orientation
- Review and update signatory designations and authorizations
- Review Bank Relationships – Line of Credit, Debt Agreements (Covenants)
- Review and Update Employee Handbook
- Review/Renew Corporate Insurance
- Directors and Officers
- Professional Liability
- Cyber Security
If you have questions on your situation, visit with one of our non-profit experts by calling (888) 388-1040.

